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Protein Structure Analysis Tools

• COILS - Prediction of Coiled Coil Regions in Proteins
• DICHROWEB-A facility of the BBSRC Centre for Protein and Membrane Structure and Dynamics
• DisEMBL-Intrinsic Protein Disorder Prediction 1.5
• EVA-EValuation of Automatic structure prediction
• GlobPlot-Intrinsic Protein Disorder, Domain & Globularity Prediction
• iMolTalk - Structural Bioinformatics Toolkit
• Java Protein Dossier
• PredictProtein
• CSBLProtein Pipeline
• PSA Sequence Analysis
• Stride Services
• Phyre (successor to 3D-PSSM)
• BioInfo3D (a collection of tools for protein analysis)
• BSDD (Biomolecules Segment Display Device)
• CaspR
• CATH Protein Structure Classification
• ClusPro
• COLORADO-3D
• Databases and Tools for 3-D Protein Structure Comparison and Alignment
• Consensus Server
• ConSeq Server
• ConSurf Server
• elNemo
• FATCAT (Flexible structure AlignmenT by Chaining Aligned fragment pairs allowing Twists)
• FoldMiner (Structural Similarity Search and Motif Discovery)
• iMOTserver (interacting Motif server)
• JOY: A tool for protein sequence-structure representation and analysis
• MODELLER: for homology or comparative modeling of protein three-dimensional structures
• DeepView-Swiss-PdbViewer
• PDB2PQR: An automated pipeline for the setup, execution, and analysis of Poisson-Boltzmann electrostatics calculations.
• PDBSiteScan
• PEPBUILD
  
• ProteinDBS
• pvSOAR
• ROBETTA: Full-chain protein structure prediction server.
• SA-Search v1.0: A program to search for 3D fragments similar to (fragments of) a query structure.
• SCOP Database: Structural Classification of Proteins.
• Search the NCBI Conserved Domain Database (CDD)
• Cn3D at the NCBI Structure: For displaying 3-dimensional structures.
• MMDB: NCBI's structure database
• MONSTER
• NCBI Structure Group
• Protein Picture Generator v1.21: A simple tool for making pictures of protein structures.
• Databases, viewers and tools
• RasMol
• YASARA (Yet Another Scientific Artificial Reality Application)