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Inducer, Cis-element, Trans factor, Gene Expression

EPD
Eukaryotic Promoter Database
Core-Promoter
A tool for finding RNAPII promoters of human genes by quadratic discriminant analysis.
TRRD
A good information resource on structural and functional organization of transcription regulatory regions of eukaryotic genes.
MIRAGE
A website dedicated to gene expression information.
Grail
A tool for prediction of TSS by neural networks.
MAR-Wiz
A useful tool for discovering Matrix Association Regions, or MARs, within DNA sequences.
Genomatix
A company dealing in tools related to gene expression analysis.
NNPP
Promoter prediction by neural netrwork for prokaryotes or eukaryotes.
NRR
A collection of databases on steroid and thyroid hormone receptor superfamily.
OOTFD
An object-oriented transcription factor database.
PLACE
A database of plant cis-acting DNA elements.
AtProbe
Arabidopsis thaliana promoter databse.
CEPDB
Caenorhabditis elegans promoter database.
CSHLmpd
CSHL mammalian promoter database
LSPD
Liver specific gene promoter databse
SCPD
Saccharomyces cerevisiae promoter database
Promoter 2.0
It is a prediction server that predicts transcription start sites of vertebrate RNA PolII promoters in DNA sequences.
Promoter Scan
A promoter prediction tool.
TESS
A web tool for predicting transcription factor binding sites in DNA sequences.
TFBIND
A software for searching transcription factor binding site.
TFSEARCH
The utility searches for transcription factor binding sites.
Softberry
Promoter analysis tools.
BIOBASE
A very good site offering several tools and databases.