Inducer, Cis-element, Trans factor, Gene Expression
- EPD
- Eukaryotic Promoter Database
- Core-Promoter
- A tool for finding RNAPII promoters of human genes by quadratic discriminant analysis.
- TRRD
- A good information resource on structural and functional organization of transcription regulatory regions of eukaryotic genes.
- MIRAGE
- A website dedicated to gene expression information.
- Grail
- A tool for prediction of TSS by neural networks.
- MAR-Wiz
- A useful tool for discovering Matrix Association Regions, or MARs, within DNA sequences.
- Genomatix
- A company dealing in tools related to gene expression analysis.
- NNPP
- Promoter prediction by neural netrwork for prokaryotes or eukaryotes.
- NRR
- A collection of databases on steroid and thyroid hormone receptor superfamily.
- OOTFD
- An object-oriented transcription factor database.
- PLACE
- A database of plant cis-acting DNA elements.
- AtProbe
- Arabidopsis thaliana promoter databse.
- CEPDB
- Caenorhabditis elegans promoter database.
- CSHLmpd
- CSHL mammalian promoter database
- LSPD
- Liver specific gene promoter databse
- SCPD
- Saccharomyces cerevisiae promoter database
- Promoter 2.0
- It is a prediction server that predicts transcription start sites of vertebrate RNA PolII promoters in DNA sequences.
- Promoter Scan
- A promoter prediction tool.
- TESS
- A web tool for predicting transcription factor binding sites in DNA sequences.
- TFBIND
- A software for searching transcription factor binding site.
- TFSEARCH
- The utility searches for transcription factor binding sites.
- Softberry
- Promoter analysis tools.
- BIOBASE
- A very good site offering several tools and databases.
