A LIST OF ONLINE RESOURCES ON IMMUNOLOGY, biophilessurf

Databases

AntiJen: An integrated database of kinetic, thermodynamic and functional aspects of MHC Ligand, TCR-MHC Complexes, T Cell Epitope, TAP, B Cell Epitope molecules and immunological Protein-Protein interactions [PubMed Central]
CED: Conformational Epitope Database A collection of conformational epitopes, the immunological property of the epitope, the source antigen and corresponding antibody of the epitope [PubMed Central]
European CD40L Defect Database: A database of CD40 ligand defects leading to X-linked Hyper-IgM syndrome
ImMunoGeneTics Database: Integrated databases of immunoglobulins, T cell receptors and the major histocompatibility complex (MHC) of all vertebrate species
V BASE: Human antibody gene database
CYBBbase: Mutation registry for X-linked chronic granulomatous disease: Disease is characterized by a defect of intracellular bacterial killing in neutrophils and monocytes.
dbMinor: Minor Histocompatibility Knowledge Database (An overview of the identified minor Histocompatibility antigens)
Epitome: Database of Structurally inferred Antigenic Epitopes in Proteins
FIMM: It is an integrated database of functional immunology. The database provides information on MHC, antigens, T- and B-cell epitopes, and diseases
HCV Immunology Database
ImmunoDeficiency Resource: A storehouse of information on the immunodeficiencies
Cytokine Gene Polymorphism in Human Disease
GPX Macrophage Atlas: A great resource for expression based studies of a range of macrophage cell types treated with pathogens and immune modulators
IL2RGbase (X-linked SCID mutation database ): A database of mutations causing human X-linked severe combined immunodeficiency
IMGT/GENE-DB: Database for human and mouse immunoglobulin and T cell receptor genes [PubMed]
IMGT/PRIMER-DB: A database which provides information on oligonucleotides or primers of the immunoglobulins (IG) and T cell receptors (TR)
IMGT/LIGM-DB: A database of immunoglobulin and T cell receptor nucleotide sequences [PubMed]
IMGT/3Dstructure-DB: A database of three-dimensional structure of immunoglobulin, T cell receptor and MHC[PubMed]
Infevers: The registry of Familial Mediterranean Fever (FMF) and Hereditary Autoinflammatory Disorders Mutations
IPD: Immuno Polymorphism Database (A database for the study of polymorphism in genes of the immune system)
JAK3base: An information source for mutations and disorders associated with JAK3 deficiency
JenPep Database: A family of immunoinformatics databases, containing quantitative data on peptide binding to Major Histocompatibility Complexes (MHCs) and to transmembrane peptide transporter (TAP) and an annotated list of T-cell epitope
NCF1base: A database of mutations associated with autosomal recessive granulomatous disease
RAG1base: Mutation database for RAG1 deficiency
SYFPEITHI: A database containing information on peptide sequences, MHC specificity, anchor positions, etc. Also a tool for prediction and retrieval of sequences according to their molecular mass
AAAAA: Atlas of Antibody Anatomy
ABG: Directory of 3D Structures of Antibodies
HLA DATABASE
Human MHC Consensus Sequence
MHC-Peptide Interaction Database version T (MPID-T): A database for sequence-structure-function information on T cell receptor/peptide/MHC interactions
EPIMHC: Database of MHC Ligands
MHCBN VERSION 4.0: A database containing detailed information about Major Histocompatibility Complex (MHC) Binding,Non-binding peptides and T-cell epitopes
SNPs in Peptides/Proteins (SiPeP): A database of Nonsynonymous coding SNPs (Single Nucleotide Polymorphisms)
BciPep: Database of B cell epitopes
ALLERDB: An allergen database
IEDB: Immune Epitope Database and Analysis Resource
Haptendb: Haptendb Database covers haptens that include pesticides, herbicides, insecticides, drugs, vitamins, steroids, hormones, toxins, dyes, explosives, etc
IPD - KIR Database: A database for human KIR (Killer-cell Immunoglobulin-like Receptors) sequences
ImmunomeBase: A database for metazoan immunity genes and orthologs

Immunology Tutorials

A good tutorial describing immune system, antibodies, cytokines, etc. By Janet M. Decker, PhD
A good tutorial on different aspects of immunology. With questions and answers (The Biology Project, The University of Arizona )
A tutorial about HIV and AIDS
A tutorial on Major Histocompatibility Complex (MHC)
A tutorial on Minor Histocompatibility Antigens by Mark Halling-Brown, School of Crystallography, Birkbeck College
THE ROLE OF COMPLEMENT IN THE ELIMINATION OF MICROORGANISMS (Stephanie Merralls)
A primer on general immunology
A good beginner's tutorial: Available at NIAID (National Institute of Allergy and Infectious Dieases)
A tutorial on human IgG subclasses
Lymphoid System
A great tutorial on immune biology: Human immunogenetics and immunobiology in health and disease
Lectures on immunology: At the Howard Hughes Medical Institute

Immunoinformatics

Immunoinformatics Comes of Age: A review article on immune response and immunoinformatics resources
Predicting Antigenic Peptides: A tool for the prediction of protein segments which could be antigenic
V-Quest: A sequence alignment tool for IG, T cell receptor V–J and V–D–J rearrangement analysis, and HLA [Nucl Acids Res]
IMGT/Allele-Align
IMGT/PhyloGene
IMGT/DomainDisplay: A tool for alignment of domains
JOINSOLVER: Web-based software for human immunoglobulin V(D)J recombination analysis
IgBlast: BLAST for Ig sequences
SoDA (Somatic Diversification analysis):A tool for analysis antigen receptor rearrangements
IMGT/JunctionAnalysis: A tool for finding the junction of IG and TR nucleotide sequences
Polymorphism Search: HLA sequence polymorphism analysis
MAPPP: MHC-I Antigenic Peptide Processing Prediction
CTLPred: A tool for prediction of Cytotoxic T Lymphocytes (CTLs) epitopes
HLA Peptide Binding Predictions
MHCPred: A tool for prediction of peptide-MHC binding
MULTIPRED: To predict peptides binding to multiple molecules of human leukocyte antigen (HLA) class I A2, A3 and class II DR supertypes
NetMHC 3.0 Server: Predicts binding of peptides to different HLA alleles
nHLAPred : MHC Class-I Binding Peptide Prediction Server
PREDEP: MHC Class I epitope prediction
ProPred-I: Tool for the identification of MHC Class-I binding regions in antigens
Prediction of high affinity HLA-A2-binding peptides, based on an matrix-based algorithm
SVMHC
EPIPREDICT: A software to predict HLA-class II restricted T cell epitopes and ligands
ProPred: This server predicts MHC Class-II binding regions in an antigen sequence
SEMANTICA: SEquence Mimicry and ANTIgen Composition Analysis
Allermatch: A tool to compare the amino acid sequence of a protein of interest with sequences of allergenic proteins
EpiVax Inc.
WAM: Web Antibody Modelling

HIV

HIV Molecular Immunology Database: A collection of HIV-1 cytotoxic and helper T-cell epitopes and antibody binding sites
HIV Sequence Database
Los Alamos HIV Drug Resistance Database: A database of of mutations in HIV genes that confer resistance to anti-HIV drugs
Nonhuman Primate HIV/SIV Vaccine Trials Database: An information source on vaccine studies using SIV and HIV in nonhuman primates
NIH AIDS Research and Reference Reagent Program
HIV Structural Reference Database
An assortment of information about HIV and AIDS : Available at NIAID, NIH

Miscellaneous

Immunology Glossary: An awesome collection of immunology definitions
Immunology at the Nature website
IMMUNOLOGY ANIMATIONS
IMMUNOLOGICAL TECHNIQUES: A list of tools, techniques, assays, etc.
Response to antigen
Structure of an antibody molecule
A primer on immunologic diseases

A few review articles on immunology