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Free bioinformatics software/tools

BioEdit: A versatile sequence alignment editor for sequence manipulation and analysis.
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Cn3D: A software to view 3-dimensional structures from NCBI's Entrez retrieval service.
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Protein Explorer: Explore 3D macromolecular structure model.
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RasMol: A molecular visualization freeware for proteins, dna and macromolecules.
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Bioinformatics software developed at the MCIC: Compare Alignment, ORF Extractor, Hit Extractor, Sequence Order Search, PexFinder 2, EleNor. Program description
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CLC Free Workbench:  A free workbench for basic sequence analysis.
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Geneious:  For analyses like sequence alignments, etc.
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MB DNA Analysis:  A DNA analysis program for restriction sites analysis, plasmid DNA drawing, calculation of GC percentage, sequence alignment, etc.
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DNA for Windows:  DNA sequence editing and analysis program.
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ZCURVE 1.0:  New system for recognizing protein coding genes in bacterial and archaeal genomes.
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ApE:  A plasmid editor which reflects Dam/Dcm blocking of enzyme sites, shows translation, Tm, %GC, etc.
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TREECON:  A software for drawing phylogenetic trees.
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ESPript, Easy Sequencing in Postscript:  A utility to generate output from aligned sequences.
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TmCheck:  A tool for calculating the melting temperature of oligonucleotides according to the Wallace rule, the Marmur-Schildkraut-Doty equation, the Chester and Marshak equation, and the Nearest Neighbour method.
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ReverseComplement:  A software for determining the reverse, complement, and reverse complement of nucleic acid sequence.
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OligoLocator:  A tool for locating probes and PCR primers within larger sequences.
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Bioclipse 1.1.3:  A workbench for chemo- and bioinformatics.
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Geneious:  A free software package providing tools for genome and proteome research.
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